Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_1057PFAM: HpcH/HpaI aldolase; KEGG: bbr:BB1049 putative aldolase; Belongs to the HpcH/HpaI aldolase family. (257 aa)    
Predicted Functional Partners:
Meso_1058
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: bbr:BB1050 putative dehydrogenase.
       0.712
Meso_1055
KEGG: eba:p2A115 hypothetical protein, potential permease subunit.
       0.705
Meso_1056
PFAM: NHL repeat; KEGG: bja:bll1368 hypothetical protein.
       0.705
Meso_2504
TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Hydratase/decarboxylase; KEGG: jan:Jann_3499 2-oxo-hepta-3-ene-1,7-dioic acid hydratase.
 
  
 0.652
Meso_1076
PFAM: Hydratase/decarboxylase; KEGG: reu:Reut_B5691 4-oxalocrotonate decarboxylase.
 
  
 0.642
Meso_2508
PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: bms:BRA1162 5-carboxymethyl-2-hydroxymuconate delta isomerase.
 
  
 0.437
Meso_1059
PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB1535 hypothetical protein.
       0.428
Meso_1060
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:blr5325 hypothetical protein.
     
 0.406
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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