Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1065PFAM: Malate/L-lactate dehydrogenase; KEGG: bpe:BP2780 putative malate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family. (375 aa)    
Predicted Functional Partners:
Meso_1066
Hypothetical protein.
       0.773
Meso_1067
PFAM: protein of unknown function DUF112, transmembrane; KEGG: sme:SMc00500 putative tricarboxylic transport membrane protein.
       0.765
Meso_1068
KEGG: bja:bll3172 putative sulfopyruvate decarboxylase subunit alpha.
     
 0.577
Meso_1069
PFAM: thiamine pyrophosphate enzyme-like TPP-binding; KEGG: bja:bll3171 hypothetical protein.
       0.568
Meso_1064
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like FAD dependent oxidoreductase; KEGG: bcl:ABC0629 hypothetical protein.
       0.416
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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