Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1074PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: bja:blr6118 hypothetical protein. (394 aa)    
Predicted Functional Partners:
Meso_3620
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: pfo:Pfl_2774 mandelate racemase/muconate lactonizing enzyme.
  
     0.738
Meso_1073
PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB1535 hypothetical protein.
  
    0.729
Meso_1075
PFAM: 6-phosphogluconate dehydrogenase, NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rso:RSp0505 2-hydroxyacid dehydrogenase.
       0.658
Meso_1071
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: atc:AGR_L_2751 hypothetical protein.
 
    
0.551
Meso_3970
PFAM: D-galactarate dehydratase/Altronate hydrolase-like; KEGG: atc:AGR_C_5115 probable D-galactarate dehydratase (GALCD).
 
  
 0.541
Meso_1072
PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB1535 hypothetical protein.
  
    0.521
Meso_1610
PFAM: amidohydrolase 2; KEGG: bja:blr1125 hypothetical protein.
 
   
 0.506
Meso_0845
PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: atc:AGR_C_1271 2-dehydro-3-deoxygalactonokinase.
 
  
 0.502
Meso_3700
Xylono-1,4-lactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: gox:GOX1793 transcriptional regulator.
 
   
 0.488
Meso_0846
PFAM: KDPG and KHG aldolase; KEGG: sme:SMc00882 putative KHG/KDPG aldolase protein.
 
   
 0.472
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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