Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1080PFAM: 6-phosphogluconate dehydrogenase, NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: bur:Bcep18194_B0500 D-isomer specific 2-hydroxyacid dehydrogenase. (310 aa)    
Predicted Functional Partners:
Meso_1079
PFAM: NADP oxidoreductase, coenzyme F420-dependent 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: sme:SMc00501 hypothetical protein.
     
 0.781
Meso_1081
PFAM: FAD dependent oxidoreductase; KEGG: rpb:RPB_1451 FAD dependent oxidoreductase.
  
  
 0.666
Meso_1078
PFAM: HpcH/HpaI aldolase; KEGG: bbr:BB1049 putative aldolase; Belongs to the HpcH/HpaI aldolase family.
       0.527
Meso_1077
PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB1535 hypothetical protein.
       0.458
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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