Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Meso_1081PFAM: FAD dependent oxidoreductase; KEGG: rpb:RPB_1451 FAD dependent oxidoreductase. (367 aa)    
Predicted Functional Partners:
Meso_3227
PFAM: protein of unknown function DUF477; KEGG: mlo:mll4128 hypothetical protein.
    
   0.685
Meso_2165
Cytochrome b/b6-like protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
 
 0.676
Meso_3220
Superoxide dismutase, copper/zinc binding protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
   
 
 0.667
Meso_1080
PFAM: 6-phosphogluconate dehydrogenase, NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: bur:Bcep18194_B0500 D-isomer specific 2-hydroxyacid dehydrogenase.
  
  
 0.666
Meso_1079
PFAM: NADP oxidoreductase, coenzyme F420-dependent 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: sme:SMc00501 hypothetical protein.
       0.664
Meso_0384
PFAM: protein of unknown function DUF461 nuclear export factor GLE1; KEGG: sme:SMc01242 signal peptide protein.
    
   0.489
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
 
  
 0.485
Meso_1078
PFAM: HpcH/HpaI aldolase; KEGG: bbr:BB1049 putative aldolase; Belongs to the HpcH/HpaI aldolase family.
       0.452
Meso_2237
PFAM: cytochrome c, class I; KEGG: rpb:RPB_1376 cytochrome c, class I.
  
 
 
 0.442
Meso_0056
Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
   
  
 0.433
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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