Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1097KEGG: sma:SAV1919 hypothetical protein. (696 aa)    
Predicted Functional Partners:
Meso_1094
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: extracellular solute-binding protein, family 1; KEGG: sco:SCO7028 putative sugar-binding lipoprotein; TC 3.A.1.1.-.
 
     0.875
Meso_1095
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0435 sugar ABC transporter permease; TC 3.A.1.1.-.
 
     0.870
Meso_1096
Carbohydrate ABC transporter membrane protein 2, CUT1 family; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH3682 multiple sugar transport system permease protein; TC 3.A.1.1.-.
 
     0.844
Meso_1098
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; KEGG: ret:RHE_PF00090 probable sugar ABC transporter, ATP-binding protein; TC 3.A.1.1.-.
       0.757
Meso_1898
TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: rsp:RSP_2360 putative head portal protein, HK97 family.
   
   0.745
Meso_1545
PFAM: nitrogen regulatory protein P-II; KEGG: ret:RHE_CH02103 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
   
 
 0.671
Meso_3237
PFAM: nitrogen regulatory protein P-II; KEGG: atc:AGR_C_4999 probable nitrogen regulatory protein; Belongs to the P(II) protein family.
   
 
 0.671
Meso_1093
Transcriptional regulator, LacI family; PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: sth:STH770 LacI family transcriptional repressor.
 
     0.619
Meso_0143
PFAM: protein of unknown function DUF1037; KEGG: sme:SMb20329 probable ThuA protein, function.
  
     0.423
Meso_1099
PFAM: ETC complex I subunit conserved region; KEGG: sme:SMc00287 putative oxidoreductase protein.
       0.406
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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