Meso_1113 protein (Chelativorans sp. BNC1) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Chelativorans sp. BNC1

NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Meso_0039	Meso_1113	Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: ATPase; KEGG: sma:SAV2984 putative arginine/ornithine transport protein, ATP-binding protein; TC 3.A.1.3.-.	General L-amino acid-binding protein; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: sme:SMc02118 probable general L-amino acid-binding periplasmic ABC transporter protein.	0.649
Meso_0039	Meso_1114	Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: ATPase; KEGG: sma:SAV2984 putative arginine/ornithine transport protein, ATP-binding protein; TC 3.A.1.3.-.	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02119 probable general L-amino acid transport permease ABC transporter protein.	0.917
Meso_0039	Meso_1115	Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: ATPase; KEGG: sma:SAV2984 putative arginine/ornithine transport protein, ATP-binding protein; TC 3.A.1.3.-.	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA2562 polar amino acid ABC transport permease protein aapM-1.	0.932
Meso_0039	Meso_1563	Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: ATPase; KEGG: sma:SAV2984 putative arginine/ornithine transport protein, ATP-binding protein; TC 3.A.1.3.-.	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bms:BR0953 amino acid ABC transporter, permease protein; TC 3.A.1.3.-.	0.916
Meso_0039	Meso_1564	Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: ATPase; KEGG: sma:SAV2984 putative arginine/ornithine transport protein, ATP-binding protein; TC 3.A.1.3.-.	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bms:BR0952 amino acid ABC transporter, permease protein; TC 3.A.1.3.-.	0.919
Meso_0039	Meso_3148	Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: ATPase; KEGG: sma:SAV2984 putative arginine/ornithine transport protein, ATP-binding protein; TC 3.A.1.3.-.	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV6282 putative glutamine ABC transporter permease protein; TC 3.A.1.3.-.	0.923
Meso_0039	Meso_3976	Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: ATPase; KEGG: sma:SAV2984 putative arginine/ornithine transport protein, ATP-binding protein; TC 3.A.1.3.-.	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00161 probable amino acid ABC transporter, permease protein; TC 3.A.1.3.-.	0.923
Meso_0039	Meso_3977	Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: ATPase; KEGG: sma:SAV2984 putative arginine/ornithine transport protein, ATP-binding protein; TC 3.A.1.3.-.	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_980GM putative ABC transporter permease; TC 3.A.1.3.-.	0.923
Meso_1113	Meso_0039	General L-amino acid-binding protein; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: sme:SMc02118 probable general L-amino acid-binding periplasmic ABC transporter protein.	Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: ATPase; KEGG: sma:SAV2984 putative arginine/ornithine transport protein, ATP-binding protein; TC 3.A.1.3.-.	0.649
Meso_1113	Meso_1114	General L-amino acid-binding protein; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: sme:SMc02118 probable general L-amino acid-binding periplasmic ABC transporter protein.	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02119 probable general L-amino acid transport permease ABC transporter protein.	0.994
Meso_1113	Meso_1115	General L-amino acid-binding protein; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: sme:SMc02118 probable general L-amino acid-binding periplasmic ABC transporter protein.	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA2562 polar amino acid ABC transport permease protein aapM-1.	0.994
Meso_1113	Meso_1116	General L-amino acid-binding protein; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: sme:SMc02118 probable general L-amino acid-binding periplasmic ABC transporter protein.	PFAM: ABC transporter related; SMART: ATPase; KEGG: bmb:BruAb1_0762 amino acid ABC transporter, ATP-binding protein.	0.992
Meso_1113	Meso_1563	General L-amino acid-binding protein; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: sme:SMc02118 probable general L-amino acid-binding periplasmic ABC transporter protein.	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bms:BR0953 amino acid ABC transporter, permease protein; TC 3.A.1.3.-.	0.749
Meso_1113	Meso_1564	General L-amino acid-binding protein; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: sme:SMc02118 probable general L-amino acid-binding periplasmic ABC transporter protein.	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bms:BR0952 amino acid ABC transporter, permease protein; TC 3.A.1.3.-.	0.693
Meso_1113	Meso_3148	General L-amino acid-binding protein; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: sme:SMc02118 probable general L-amino acid-binding periplasmic ABC transporter protein.	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV6282 putative glutamine ABC transporter permease protein; TC 3.A.1.3.-.	0.647
Meso_1113	Meso_3975	General L-amino acid-binding protein; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: sme:SMc02118 probable general L-amino acid-binding periplasmic ABC transporter protein.	Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: ATPase; KEGG: atc:AGR_L_381 glutamine ABC transporter, ATP-binding protein (glnQ); TC 3.A.1.3.-.	0.646
Meso_1113	Meso_3976	General L-amino acid-binding protein; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: sme:SMc02118 probable general L-amino acid-binding periplasmic ABC transporter protein.	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00161 probable amino acid ABC transporter, permease protein; TC 3.A.1.3.-.	0.686
Meso_1113	Meso_3977	General L-amino acid-binding protein; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: sme:SMc02118 probable general L-amino acid-binding periplasmic ABC transporter protein.	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_980GM putative ABC transporter permease; TC 3.A.1.3.-.	0.713
Meso_1114	Meso_0039	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02119 probable general L-amino acid transport permease ABC transporter protein.	Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: ATPase; KEGG: sma:SAV2984 putative arginine/ornithine transport protein, ATP-binding protein; TC 3.A.1.3.-.	0.917
Meso_1114	Meso_1113	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02119 probable general L-amino acid transport permease ABC transporter protein.	General L-amino acid-binding protein; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: sme:SMc02118 probable general L-amino acid-binding periplasmic ABC transporter protein.	0.994