Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1128PFAM: RDD domain containing protein; KEGG: mlo:mll8365 hypothetical protein. (152 aa)    
Predicted Functional Partners:
Meso_1408
KEGG: bmf:BAB1_1043 hypothetical protein.
  
     0.741
Meso_2214
KEGG: mlo:mlr2817 hypothetical protein.
  
     0.714
Meso_1726
PFAM: transglutaminase-like cysteine peptidase, BTLCP; KEGG: mlo:mll0183 hypothetical protein.
  
     0.704
Meso_0686
PFAM: transglutaminase-like cysteine peptidase, BTLCP; KEGG: mlo:mll4550 hypothetical protein.
  
     0.700
Meso_1118
KEGG: sme:SMc02115 hypothetical unknown protein.
  
   
 0.684
Meso_1129
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: mlo:mll8390 delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
       0.684
Meso_3377
PFAM: RNA-binding S4; KEGG: bmb:BruAb1_1753 S4 domain protein.
  
    0.667
Meso_0740
PFAM: Invasion associated locus B; KEGG: mlo:mll7488 hypothetical protein.
  
     0.646
Meso_1131
KEGG: mlo:mlr8393 hypothetical protein.
 
     0.638
bpt
arginine-tRNA-protein transferase-like protein; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.
 
   
 0.636
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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