Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_1142PFAM: SmpA/OmlA; KEGG: mlo:mll8419 hypothetical protein. (176 aa)    
Predicted Functional Partners:
bamD
Putative lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 0.973
bamA
Surface antigen (D15); Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.972
Meso_0241
KEGG: ppu:PP1573 major tail protein, putative.
    
 0.849
Meso_1144
KEGG: bmb:BruAb1_0790 hypothetical protein.
 
    0.746
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
  
 0.736
Meso_3090
PFAM: protein of unknown function DUF214; KEGG: mlo:mlr3523 similar to cell division protein FtsX.
  
     0.704
Meso_3255
PFAM: protein of unknown function DUF1036; KEGG: bmb:BruAb1_1734 hypothetical protein.
  
     0.695
Meso_1143
PFAM: Ubiquinol-cytochrome C chaperone; KEGG: mlo:mlr8420 hypothetical protein.
 
     0.689
Meso_2211
KEGG: mlo:mlr2813 hypothetical protein.
  
     0.681
Meso_1812
PFAM: Sporulation related; KEGG: bme:BMEI1088 soluble lytic murein transglycosylase.
  
     0.672
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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