Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Meso_1166PFAM: CoA-binding; KEGG: mlo:mlr8464 hypothetical protein. (145 aa)    
Predicted Functional Partners:
Meso_1167
TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mlo:mlr8465 O-acetylhomoserine (thiol)-lyase.
      0.943
Meso_1165
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mlr8462 hypothetical protein.
       0.801
fur
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: mlo:mlr5570 transcription regulator; Belongs to the Fur family.
  
    0.547
fur-2
Manganese uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: bmb:BruAb1_1641 hypothetical ferric uptake regulation protein; Belongs to the Fur family.
  
    0.547
Meso_4003
KEGG: ret:RHE_CH02709 zinc uptake transcriptional regulator protein, Fur family; Belongs to the Fur family.
  
    0.547
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
 
      0.535
Meso_0301
PFAM: flagellar basal body rod protein protein of unknown function DUF1078-like; KEGG: mlo:mlr2907 flagellar basal-body rod protein flgF.
    
   0.531
rpsI
PFAM: ribosomal protein S9; KEGG: mlo:mll8456 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
       0.457
rplM
LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
       0.457
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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