Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1178PFAM: Ion transport protein Ion transport 2; KEGG: mlo:mll0869 ion transporter. (267 aa)    
Predicted Functional Partners:
Meso_1179
PFAM: NUDIX hydrolase; KEGG: hch:HCH_06993 ADP-ribose pyrophosphatase.
       0.559
Meso_1176
PFAM: protein of unknown function DUF1206; KEGG: psb:Psyr_2236 protein of unknown function DUF1206.
 
     0.455
Meso_1177
KEGG: mlo:mlr2577 hypothetical protein.
       0.420
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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