Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Meso_1188Hypothetical protein; KEGG: ecj:JW1344 exonuclease VIII, 5' -> 3' specific dsDNA exonuclease. (328 aa)    
Predicted Functional Partners:
Meso_1187
KEGG: sty:STY2074 hypothetical protein.
 
  
 0.904
Meso_1185
PFAM: HNH endonuclease; KEGG: mlo:mll7975 hypothetical protein.
     
 0.783
Meso_1183
Hypothetical protein.
       0.773
Meso_1184
Hypothetical protein.
       0.773
Meso_1186
PFAM: heat shock protein DnaJ-like.
       0.773
Meso_2872
KEGG: sme:SMb21513 putative cell-surface polysaccharide exporter protein, PST family.
  
     0.773
Meso_3580
DNA helicase/exodeoxyribonuclease V, subunit B; KEGG: mlo:mll5084 hypothetical protein.
    
 0.739
Meso_1215
KEGG: mlo:mlr8006 hypothetical protein.
  
     0.702
ruvA
Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
    
 0.691
ruvB
Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
    
 0.683
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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