Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_1191PFAM: protein of unknown function DUF955; KEGG: mag:amb3753 predicted Zn peptidase. (177 aa)    
Predicted Functional Partners:
Meso_1192
Hypothetical protein.
       0.773
Meso_1193
Putative phage repressor; PFAM: peptidase S24, S26A and S26B; KEGG: bja:blr6135 hypothetical protein.
       0.769
Meso_3581
DNA helicase/exodeoxyribonuclease V, subunit A; PFAM: UvrD/REP helicase; KEGG: mlo:mll5083 ATP-dependent nuclease subunit A; Belongs to the helicase family. UvrD subfamily.
    
  0.659
ruvA
Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
     
  0.653
Meso_1194
Hypothetical protein.
       0.542
Meso_1195
Hypothetical protein.
       0.542
Meso_0546
PFAM: UvrD/REP helicase; KEGG: eba:ebA6583 predicted DNA helicase.
     
  0.405
Meso_1177
KEGG: mlo:mlr2577 hypothetical protein.
     
  0.405
Meso_1988
ATP-dependent DNA helicase, Rep family; PFAM: UvrD/REP helicase; KEGG: bms:BR1413 DNA helicase II.
     
  0.405
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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