Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1216KEGG: mca:MCA2924 hypothetical protein. (121 aa)    
Predicted Functional Partners:
Meso_1217
KEGG: bhe:BH03290 phage protein GP20.
 
     0.940
Meso_0712
Tetratricopeptide TPR_2; PFAM: TPR repeat Peptidoglycan-binding LysM Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mlo:mlr7432 hypothetical protein.
  
 
 0.840
Meso_0972
PFAM: Peptidoglycan-binding LysM; KEGG: mlo:mlr7813 hypothetical protein.
  
 
 0.839
Meso_2725
5'-Nucleotidase-like protein; PFAM: Peptidoglycan-binding LysM metallophosphoesterase 5'-Nucleotidase-like; KEGG: ret:RHE_CH03555 probable 5'-nucleotidase protein; Belongs to the 5'-nucleotidase family.
  
 
 0.839
Meso_1784
PFAM: protein of unknown function DUF1508; KEGG: ret:RHE_CH03509 hypothetical protein.
   
 
 0.822
Meso_1215
KEGG: mlo:mlr8006 hypothetical protein.
     
 0.789
Meso_1218
Hypothetical protein.
       0.737
Meso_0243
KEGG: hch:HCH_00681 hypothetical protein.
  
  
 0.612
Meso_1231
KEGG: rsp:RSP_2351 hypothetical protein.
  
   0.566
Meso_1233
Hypothetical protein.
  
   0.566
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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