Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1223KEGG: mlo:mlr8013 hypothetical protein. (349 aa)    
Predicted Functional Partners:
Meso_1224
KEGG: mlo:mlr8014 hypothetical protein.
       0.832
Meso_1215
KEGG: mlo:mlr8006 hypothetical protein.
 
   
 0.810
Meso_1213
TIGRFAM: phage-associated protein, HI1409 family; KEGG: mlo:mlr8004 hypothetical protein.
 
   
 0.787
Meso_2872
KEGG: sme:SMb21513 putative cell-surface polysaccharide exporter protein, PST family.
  
     0.606
Meso_1231
KEGG: rsp:RSP_2351 hypothetical protein.
 
     0.569
Meso_0995
PFAM: Xylose isomerase-like TIM barrel; KEGG: sme:SMc03130 hypothetical protein.
  
     0.561
Meso_1222
Hypothetical protein.
       0.547
Meso_1513
TIGRFAM: conserved repeat domain; KEGG: sme:SMc01711 hypothetical protein.
  
     0.509
Meso_3521
KEGG: bja:blr5705 hypothetical protein.
  
     0.486
Meso_2598
KEGG: sme:SMc03148 hypothetical protein.
  
     0.456
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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