Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1236Hypothetical protein. (845 aa)    
Predicted Functional Partners:
Meso_1235
Hypothetical protein.
  
   0.802
Meso_1231
KEGG: rsp:RSP_2351 hypothetical protein.
  
   0.761
Meso_1233
Hypothetical protein.
  
   0.761
Meso_1886
TIGRFAM: phage head-tail adaptor, putative; KEGG: nwi:Nwi_1619 phage head-tail adaptor, putative.
  
 
 0.741
Meso_1898
TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: rsp:RSP_2360 putative head portal protein, HK97 family.
  
 
 0.741
Meso_1230
Hypothetical protein.
       0.661
Meso_1232
Hypothetical protein.
       0.661
Meso_1234
Hypothetical protein.
       0.661
Meso_1895
TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; KEGG: rsp:RSP_2358 possible phage phi-C31 GP36-like protein / major capsid protein, HK97 family.
  
 
 0.543
Meso_1228
KEGG: rsp:RSP_3787 hypothetical protein.
       0.506
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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