Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_1238KEGG: bms:BRA0423 outer membrane protein, 31 kDa. (234 aa)    
Predicted Functional Partners:
Meso_2915
Hypothetical protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
 0.918
Meso_0939
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
 0.870
Meso_3664
PFAM: protein of unknown function DUF1150; KEGG: mlo:msr3193 contains weak similarity to NADH oxidase.
  
     0.690
Meso_0740
PFAM: Invasion associated locus B; KEGG: mlo:mll7488 hypothetical protein.
  
     0.677
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
  
 0.666
Meso_1010
KEGG: mlo:mlr0912 hypothetical protein.
  
     0.657
Meso_2063
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: rsp:RSP_2402 putative TonB dependent vitamin B12 outer membrane receptor.
     
 0.591
Meso_1118
KEGG: sme:SMc02115 hypothetical unknown protein.
  
     0.587
Meso_3157
KEGG: mlo:mll3872 hypothetical protein.
  
     0.575
Meso_2069
PFAM: OmpA/MotB; KEGG: mlo:mlr2412 hypothetical protein.
  
 0.570
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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