Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1239KEGG: bmf:BAB2_0084 hypothetical protein. (258 aa)    
Predicted Functional Partners:
Meso_1240
KEGG: mlo:msl0440 hypothetical protein.
       0.773
Meso_1241
Hypothetical protein.
       0.773
Meso_1242
Hypothetical protein.
       0.586
Meso_0675
Mn2+-dependent serine/threonine protein kinase; KEGG: bmb:BruAb1_2096 hypothetical protein.
  
     0.540
Meso_0426
KEGG: mlo:mlr8251 hypothetical protein.
  
     0.452
Meso_2030
KEGG: mlo:mlr1592 hypothetical protein.
  
     0.412
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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