Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1246PFAM: protein of unknown function DUF1696; KEGG: son:SO3796 hypothetical protein. (125 aa)    
Predicted Functional Partners:
Meso_1247
KEGG: rsp:RSP_3768 hypothetical protein.
       0.648
Meso_1243
RNA polymerase, sigma-24 subunit, RpoE; PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: ret:RHE_PF00422 putative RNA polymerase sigma factor protein, ECF family.
       0.444
Meso_1244
PFAM: blue (type 1) copper domain; KEGG: hma:pNG6030 putative copper binding protein.
       0.444
Meso_1245
KEGG: tth:TT_P0163 hypothetical protein.
       0.444
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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