STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1256KEGG: bms:BRA0357 disulfide bond formation protein DsbB, putative. (215 aa)    
Predicted Functional Partners:
Meso_1257
KEGG: bms:BRA0356 hypothetical protein.
       0.786
Meso_0585
TIGRFAM: autotransporter-associated beta strand repeat protein; KEGG: bms:BRA1148 outer membrane autotransporter.
  
     0.751
Meso_0586
TIGRFAM: outer membrane autotransporter barrel domain autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta-domain Haemagluttinin; KEGG: bme:BMEII0148 extracellular serine protease.
  
     0.732
Meso_1713
PFAM: DSBA oxidoreductase; KEGG: mlo:mll0208 outer membrane protein.
 
 
 0.668
Meso_0767
PFAM: DSBA oxidoreductase; KEGG: mlo:mlr7525 hypothetical protein.
  
 
 0.610
Meso_3532
TIGRFAM: outer membrane autotransporter barrel domain autotransporter-associated beta strand repeat protein; PFAM: Pertactin Autotransporter beta-domain; KEGG: bmb:BruAb2_1085 outer membrane autotransporter.
  
     0.574
Meso_1258
PFAM: protein of unknown function DUF218; KEGG: rpa:RPA3160 DUF218.
       0.532
Meso_3370
TIGRFAM: outer membrane autotransporter barrel domain autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta-domain; KEGG: bms:BRA1148 outer membrane autotransporter.
  
     0.449
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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