Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Meso_1262PFAM: OmpA/MotB 17 kDa surface antigen; KEGG: ret:RHE_CH02810 outer membrane lipoprotein. (217 aa)    
Predicted Functional Partners:
Meso_2754
PFAM: polysaccharide export protein; KEGG: bpm:BURPS1710b_3301 WcbC.
   
 0.770
Meso_1569
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: mlo:mll1107 outer membrane protein, nodT candidate.
  
 0.749
Meso_3188
PFAM: OmpA/MotB; KEGG: mlo:mlr3926 similar to flagellar motor protein MotB.
   
 0.740
Meso_0284
PFAM: OmpA/MotB; KEGG: mlo:mlr2931 flagellar motor protein MotB.
   
 0.737
Meso_1156
PFAM: polysaccharide export protein; KEGG: bmb:BruAb1_0798 capsule polysaccharide export protein, hypothetical.
  
 0.735
Meso_2063
PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: rsp:RSP_2402 putative TonB dependent vitamin B12 outer membrane receptor.
  
  
 0.726
Meso_0652
PFAM: polysaccharide export protein; KEGG: mlo:mll5251 exopolysaccharide production protein exoF.
   
 0.700
Meso_2593
PFAM: polysaccharide export protein; KEGG: ret:RHE_CH01370 exopolysaccharide biosynthesis protein (OMA family outer membrane saccharide export protein).
   
 0.700
Meso_0279
PFAM: flagellar basal body rod protein protein of unknown function DUF1078-like flagellar basal body FlaE; KEGG: mlo:mlr2937 flagellar hook protein FlgE.
   
 
 0.698
Meso_0297
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078-like; KEGG: mlo:mlr2912 flagellar basal-body rod protein flgC; Belongs to the flagella basal body rod proteins family.
   
   0.686
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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