Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1274PFAM: BioY protein; KEGG: mlo:mlr7429 bioY protein. (196 aa)    
Predicted Functional Partners:
Meso_1275
KEGG: mlo:mlr7430 hypothetical protein.
    0.947
Meso_0776
PFAM: BioY protein; KEGG: mlo:mlr7548 probable biotin synthase.
  
  
 
0.917
Meso_1273
TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: mlo:mll0053 monothiol glutaredoxin; Belongs to the glutaredoxin family. Monothiol subfamily.
       0.488
Meso_1036
TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase-like biotin/lipoate A/B protein ligase; KEGG: mlo:mll1351 biotin-protein ligase birA.
 
   
 0.460
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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