Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1286KEGG: mlo:mll0081 hypothetical protein. (244 aa)    
Predicted Functional Partners:
Meso_1287
PFAM: peptidase S58, DmpA; KEGG: mlo:mll0085 hypothetical protein.
       0.784
Meso_1288
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; PFAM: Extracellular ligand-binding receptor; KEGG: mlo:mll0086 amino acid binding protein; TC 3.A.1.4.-.
       0.784
Meso_2167
KEGG: sme:SMc00337 hypothetical/unknown protein.
  
     0.742
Meso_0172
Phasin; TIGRFAM: phasin; KEGG: mlo:mlr6541 hypothetical protein.
  
     0.730
Meso_3086
KEGG: mlo:mlr3533 hypothetical protein.
  
     0.706
Meso_1984
AsmA; PFAM: AsmA; KEGG: mlo:mll1482 hypothetical protein.
  
     0.677
Meso_1158
KEGG: mlo:mll8447 hypothetical protein.
  
     0.667
Meso_1285
TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: mlo:mll0079 adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
       0.664
Meso_0761
KEGG: bmb:BruAb1_0508 lipoprotein, hypothetical.
  
     0.653
Meso_1153
KEGG: mlo:mll8434 hypothetical protein.
  
     0.653
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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