Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1343KEGG: mlo:mll7595 hypothetical protein. (571 aa)    
Predicted Functional Partners:
Meso_1342
PFAM: TadE-like; KEGG: mlo:mll7596 hypothetical protein.
 
    0.963
Meso_4096
KEGG: mlo:mll5591 hypothetical protein.
 
  
 0.604
Meso_1123
KEGG: mlo:mll8359 hypothetical protein.
  
     0.579
Meso_3997
PFAM: type II and III secretion system protein transport-associated; KEGG: mlo:mlr5597 exporter protein, cpaC; Belongs to the bacterial secretin family.
 
  
 0.574
Meso_0614
PFAM: type II and III secretion system protein transport-associated; KEGG: sme:SMa0163 probable PilQ pilus assembly protein; Belongs to the bacterial secretin family.
 
  
 0.497
Meso_0629
KEGG: sme:SMb21006 hypothetical membrane protein.
  
     0.486
Meso_1153
KEGG: mlo:mll8434 hypothetical protein.
  
     0.485
Meso_3999
KEGG: sme:SMc04109 putative response regulator protein.
 
  
 0.479
Meso_3933
PFAM: HWE histidine kinase; KEGG: sme:SMc00322 hypothetical protein.
  
     0.478
Meso_0117
Flp pilus assembly protein secretin CpaC-like protein; KEGG: bpm:BURPS1710b_2040 RhcC2; Belongs to the bacterial secretin family.
 
  
 0.475
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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