Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Meso_1352PFAM: protein of unknown function DUF983; KEGG: mlo:mlr0842 hypothetical protein. (145 aa)    
Predicted Functional Partners:
Meso_1351
PFAM: NUDIX hydrolase; KEGG: mlo:mlr0843 hypothetical protein.
 
     0.849
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
       0.833
rnr
RNAse R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
       0.806
Meso_4040
PFAM: protein of unknown function DUF1052; KEGG: mlo:mll5310 hypothetical protein.
  
   
 0.697
Meso_3568
KEGG: mlo:mlr3177 hypothetical protein.
  
     0.656
Meso_0189
PFAM: Uncharacterised conserved protein UCP032146; KEGG: bmb:BruAb1_0279 hypothetical protein; Belongs to the UPF0262 family.
 
   
 0.617
ctaG
Cytochrome c oxidase assembly protein CtaG/Cox11; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.
 
     0.614
rpmG
PFAM: ribosomal protein L33; KEGG: bmb:BruAb2_0615 RpmG, ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
       0.564
Meso_4042
PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: mlo:mlr5307 two-component, sensor histidine protein kinase.
  
     0.493
Meso_1282
PFAM: protein of unknown function DUF1476; KEGG: mlo:mlr0071 hypothetical protein.
  
     0.483
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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