Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_1385Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. (237 aa)    
Predicted Functional Partners:
Meso_0711
PFAM: Polyprenyl synthetase; KEGG: mlo:mlr7426 octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 
 0.986
Meso_3429
Farnesyl-diphosphate synthase; PFAM: Polyprenyl synthetase; KEGG: mlo:mlr3784 geranyltranstransferase (farnesyl-diphosphate synthase); Belongs to the FPP/GGPP synthase family.
 
 
 0.986
Meso_1386
PFAM: phosphatidate cytidylyltransferase; KEGG: mlo:mll0639 phosphatidate cytidylyltransferase; Belongs to the CDS family.
  
  
 0.978
frr
Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
  
  
 0.933
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
  
  
 0.929
uppP
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
     
 0.927
Meso_1387
Site-2 protease. Metallo peptidase. MEROPS family M50B; KEGG: mlo:mll0638 hypothetical zinc metalloprotease; TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF.
  
  
 0.887
Meso_1794
PFAM: Squalene/phytoene synthase; KEGG: mlo:mll1068 phytoene synthase.
   
 
 0.831
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro); Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 2 subfamily.
  
  
 0.800
pnp
3' exoribonuclease; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
 
    0.750
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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