Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_1407Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR Autoinducer-binding; KEGG: ret:RHE_CH02915 autoinducer transcriptional regulator protein. (241 aa)    
Predicted Functional Partners:
Meso_2312
PFAM: autoinducer synthesis protein; KEGG: rpb:RPB_3320 autoinducer synthesis protein.
 
  
 0.769
Meso_2311
Transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR Autoinducer-binding Sigma-70, region 4 type 2; KEGG: rpb:RPB_3321 transcriptional regulator, LuxR family.
 
   
 0.753
Meso_2138
PFAM: beta-lactamase-like; KEGG: mlo:mll2661 probable hydrolase.
    
 
 0.456
Meso_2405
PFAM: beta-lactamase-like; KEGG: sso:SSO2940 hypothetical protein.
    
 
 0.456
Meso_2500
PFAM: beta-lactamase-like; KEGG: eca:ECA2849 metallo-beta-lactamase.
    
 
 0.456
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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