Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1408KEGG: bmf:BAB1_1043 hypothetical protein. (1652 aa)    
Predicted Functional Partners:
Meso_1812
PFAM: Sporulation related; KEGG: bme:BMEI1088 soluble lytic murein transglycosylase.
  
 
   0.920
Meso_0740
PFAM: Invasion associated locus B; KEGG: mlo:mll7488 hypothetical protein.
  
   
 0.774
Meso_1010
KEGG: mlo:mlr0912 hypothetical protein.
  
     0.772
Meso_1460
KEGG: mlo:mll0525 hypothetical protein.
  
     0.769
Meso_0881
KEGG: mlo:mll7655 hypothetical protein.
  
     0.768
Meso_2214
KEGG: mlo:mlr2817 hypothetical protein.
  
     0.768
Meso_3157
KEGG: mlo:mll3872 hypothetical protein.
 
     0.762
Meso_1118
KEGG: sme:SMc02115 hypothetical unknown protein.
  
     0.760
Meso_1984
AsmA; PFAM: AsmA; KEGG: mlo:mll1482 hypothetical protein.
  
     0.759
Meso_3097
TIGRFAM: conserved hypothetical protein; KEGG: mlo:mlr3512 hypothetical protein.
   
   0.759
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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