Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1416PFAM: conserved hypothetical protein 1620; KEGG: mlo:mlr0776 hypothetical protein. (354 aa)    
Predicted Functional Partners:
Meso_1417
PFAM: protein of unknown function DUF463, YcjX-like protein; KEGG: mlo:mlr0775 hypothetical protein.
 
  
 0.990
Meso_1010
KEGG: mlo:mlr0912 hypothetical protein.
  
     0.682
Meso_1415
KEGG: bmb:BruAb1_1037 hypothetical protein.
       0.674
Meso_0740
PFAM: Invasion associated locus B; KEGG: mlo:mll7488 hypothetical protein.
  
     0.664
Meso_0879
PFAM: protein of unknown function DUF1491; KEGG: mlo:mlr7652 hypothetical protein.
  
     0.650
Meso_1418
Putative phosphohistidine phosphatase, SixA; PFAM: Phosphoglycerate mutase; KEGG: mlo:mlr0774 hypothetical protein.
       0.650
Meso_2732
PFAM: protein of unknown function DUF882 Peptidase M15A; KEGG: bme:BMEII0010 hypothetical membrane associated protein.
  
     0.649
Meso_0859
PFAM: ErfK/YbiS/YcfS/YnhG; KEGG: bmb:BruAb1_0586 hypothetical protein.
  
     0.645
Meso_3596
Murein endopeptidase. Metallo peptidase. MEROPS family M74; PFAM: peptidase U6, penicillin-insensitive murein endopeptidase; KEGG: mlo:mlr4639 penicillin-insensitive murein endopeptidase A.
  
     0.632
Meso_0096
KEGG: bms:BRA0423 outer membrane protein, 31 kDa.
  
     0.593
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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