Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_1457PFAM: MscS Mechanosensitive ion channel; KEGG: rsp:RSP_1895 small-conductance mechanosensitive ion channel. (768 aa)    
Predicted Functional Partners:
gcvP
Glycine dehydrogenase (decarboxylating) alpha subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
    0.588
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
  
    0.491
sfsA
PFAM: sugar fermentation stimulation protein; KEGG: atc:AGR_C_2956 sugar fermentation stimulation protein homolog; Belongs to the SfsA family.
       0.479
Meso_1398
KEGG: sme:SMb21440 hypothetical protein.
  
     0.442
Meso_1454
PFAM: DNA repair protein RadC; KEGG: atc:AGR_C_2959 DNA repair protein RadC homolog; Belongs to the UPF0758 family.
       0.440
Meso_0433
Kef-type potassium/proton antiporter, CPA2 family; TIGRFAM: potassium efflux system protein; PFAM: TrkA-N sodium/hydrogen exchanger; KEGG: bms:BRA0210 glutathione-regulated potassium-efflux system protein, putative; TC 2.A.37.1; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
  
 0.419
Meso_2388
KEGG: bpa:BPP0373 hypothetical protein.
  
     0.415
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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