Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1466KEGG: sme:SMc01562 hypothetical protein. (97 aa)    
Predicted Functional Partners:
Meso_1467
PFAM: protein of unknown function UPF0047; KEGG: sme:SMc01559 hypothetical protein.
       0.671
Meso_0720
PFAM: protein of unknown function DUF1326; KEGG: sme:SMc02860 hypothetical protein.
  
     0.550
Meso_2478
KEGG: bja:bll3781 hypothetical protein.
 
     0.489
Meso_2476
PFAM: cytochrome c oxidase, subunit III; KEGG: mlo:mlr1042 cytochrome c oxidase subunit III.
 
     0.466
Meso_0721
KEGG: sme:SMc02859 hypothetical protein.
  
     0.456
rpoD
RNA polymerase, sigma 38 subunit, RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
       0.441
Meso_3369
PFAM: protein of unknown function DUF107; KEGG: sme:SMb20990 probable membrane protein necessary for nodulation competitiveness.
  
     0.410
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.