Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_1473RNA polymerase, sigma subunit, ECF family; PFAM: sigma-70 region 2 Tetratricopeptide TPR_2 Sigma-70, region 4 type 2; KEGG: mlo:mll2869 probable sigma-70 factor, ECF subfamily. (421 aa)    
Predicted Functional Partners:
Meso_1474
PFAM: DGPFAETKE; KEGG: sme:SMc01151 conserved hypothetical protein.
 
    0.962
Meso_2197
PFAM: DGPFAETKE; KEGG: rpb:RPB_1804 DGPF protein.
 
    0.804
Meso_1472
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH04090 hypothetical protein.
 
     0.705
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.
       0.532
Meso_1959
KEGG: bja:bsl6676 hypothetical protein.
  
     0.509
Meso_1309
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mlr1197 hypothetical protein.
 
     0.424
Meso_4061
KEGG: sme:SMc04161 hypothetical protein.
 
     0.417
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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