Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_1478TIGRFAM: Twin-arginine translocation pathway signal; PFAM: metallophosphoesterase; KEGG: ret:RHE_CH01204 probable phosphatase protein. (314 aa)    
Predicted Functional Partners:
Meso_3723
Hypothetical protein; KEGG: gga:424836 similar to chromosome 21 open reading frame 29; TSP-EAR.
  
     0.467
Meso_0670
KEGG: mlo:mlr5063 hypothetical protein.
  
     0.463
Meso_1375
PFAM: glycosyl transferase, family 25; KEGG: atc:AGR_C_3310 glycosyl transferase, family 25.
  
     0.451
Meso_1942
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like; KEGG: ppu:PP3761 sensor histidine kinase/response regulator.
  
  
 0.427
Meso_1482
KEGG: bmb:BruAb1_1334 hypothetical acid-shock protein.
    
 0.418
Meso_1479
Aminotransferase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase aminotransferase, class I and II; KEGG: mlo:mlr1282 aspartate transaminase.
       0.409
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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