Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_1485PFAM: cyclic nucleotide-binding; KEGG: ret:RHE_CH02940 probable transcriptional regulator protein, Fnr/CRP family. (244 aa)    
Predicted Functional Partners:
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.665
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.653
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.649
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.635
Meso_1942
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like; KEGG: ppu:PP3761 sensor histidine kinase/response regulator.
  
 
 0.563
Meso_1484
TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI; KEGG: bja:bll8044 proteinase.
  
   0.540
Meso_1483
PFAM: GAF HWE histidine kinase; KEGG: sme:SMa1696 hypothetical protein.
 
 
 
 0.499
Meso_0757
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: bms:BR0481 sensory box/GGDEF domain/EAL domain protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL Diverse 7TM receptor, extracellular region 2 Diverse 7TM receptor, transmembrane region PAS fold-3; SMART: PAC motif.
   
 0.462
Meso_2069
PFAM: OmpA/MotB; KEGG: mlo:mlr2412 hypothetical protein.
  
     0.452
Meso_0466
TIGRFAM: MIP family channel proteins; PFAM: major intrinsic protein; KEGG: mlo:mll6943 aquaporin, nodulin-like intrinsic protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 0.447
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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