Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Meso_1487KEGG: lpp:lpp0258 hypothetical protein. (105 aa)    
Predicted Functional Partners:
Meso_1486
PFAM: protein of unknown function DUF87; KEGG: mlo:mlr1445 hypothetical protein.
       0.504
Meso_1488
TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: mlo:mll1433 acetolactate synthase large subunit.
       0.453
Meso_1489
TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT; KEGG: mlo:mll1432 acetolactate synthase small subunit.
   
   0.423
Meso_2603
PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: tcx:Tcr_1011 periplasmic ATP/GTP-binding protein.
    
  0.421
Meso_3588
PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: bme:BMEI1997 gluconolactonase.
    
  0.421
Meso_3700
Xylono-1,4-lactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: gox:GOX1793 transcriptional regulator.
    
  0.421
Meso_3770
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: bja:bll6697 putative glconolactonase.
    
  0.421
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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