Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_1492KEGG: bms:BR1386 hypothetical protein. (135 aa)    
Predicted Functional Partners:
pdxJ
Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
       0.620
Meso_0914
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mlo:mll7713 hypothetical protein.
  
     0.618
Meso_0585
TIGRFAM: autotransporter-associated beta strand repeat protein; KEGG: bms:BRA1148 outer membrane autotransporter.
  
     0.545
Meso_0880
KEGG: mlo:mll7653 hypothetical protein.
  
     0.528
Meso_0690
KEGG: mlo:mll7402 hypothetical protein.
  
     0.514
Meso_1498
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bmb:BruAb1_1372 hypothetical protein.
  
     0.495
Meso_3101
PFAM: PRC-barrel; KEGG: mlo:mll3685 hypothetical protein.
  
     0.461
Meso_0853
Transcriptional regulator/antitoxin, MazE; TIGRFAM: putative addiction module antidote; PFAM: SpoVT/AbrB-like; KEGG: bmb:BruAb1_0580 transcriptional regulator, AbrB family.
  
     0.409
Meso_3019
KEGG: mlo:mlr3471 hypothetical protein.
  
     0.409
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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