Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Meso_1506PFAM: extracellular solute-binding protein, family 5; KEGG: psp:PSPPH_2786 ABC-transport protein, solute-binding component. (501 aa)    
Predicted Functional Partners:
Meso_1504
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_321 dipeptide transport system permease protein DppC.
 
  0.925
Meso_1505
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: psb:Psyr_2679 binding-protein-dependent transport systems inner membrane component.
 
   0.891
Meso_1699
PFAM: extracellular solute-binding protein, family 5; KEGG: mlo:mlr0514 probable binding protein component of ABC transporter.
  
 
 0.858
Meso_1114
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02119 probable general L-amino acid transport permease ABC transporter protein.
   
 
  0.857
Meso_1540
Protein of unknown function DUF140; PFAM: Sulfate transporter/antisigma-factor antagonist STAS protein of unknown function DUF140; KEGG: mlo:mll0801 putative ABC transport system permease protein.
     
  0.857
Meso_1564
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bms:BR0952 amino acid ABC transporter, permease protein; TC 3.A.1.3.-.
     
  0.857
Meso_1757
PFAM: permease YjgP/YjgQ; KEGG: mlo:mll7866 hypothetical protein.
     
  0.857
Meso_1758
PFAM: permease YjgP/YjgQ; KEGG: mlo:mll7865 hypothetical protein.
     
  0.857
Meso_1912
PFAM: ABC-2 type transporter; KEGG: eba:ebA6231 ABC transporter permease protein.
     
  0.857
Meso_2530
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_pAT_304 high-affinity transport system for glycine betaine and proline.
     
  0.857
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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