Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_1511PFAM: protein of unknown function DUF81; KEGG: tcx:Tcr_1412 protein of unknown function DUF81. (278 aa)    
Predicted Functional Partners:
Meso_1509
Gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: rpa:RPA2331 possible gamma-glutamyltranspeptidase.
       0.780
Meso_1507
PFAM: ROK domain containing protein; KEGG: ret:RHE_CH01552 probable transcriptional regulator protein, ROK family.
  
    0.775
Meso_1508
TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: rba:RB2532 glucosamine-6-phosphate isomerase.
  
    0.773
Meso_1510
PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; KEGG: rpb:RPB_1648 ABC transporter related; Belongs to the ABC transporter superfamily.
       0.773
Meso_1506
PFAM: extracellular solute-binding protein, family 5; KEGG: psp:PSPPH_2786 ABC-transport protein, solute-binding component.
       0.502
Meso_1504
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_321 dipeptide transport system permease protein DppC.
       0.404
Meso_1505
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: psb:Psyr_2679 binding-protein-dependent transport systems inner membrane component.
       0.404
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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