Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1520PFAM: protein of unknown function DUF490; KEGG: bmb:BruAb1_0049 hypothetical protein. (1538 aa)    
Predicted Functional Partners:
Meso_1521
PFAM: surface antigen (D15) surface antigen variable number; KEGG: bmb:BruAb1_0048 hypothetical protein.
 
 0.999
bamA
Surface antigen (D15); Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 0.843
Meso_0167
AsmA; PFAM: AsmA; KEGG: mlo:mll6538 AsmA protein, assembly of outermembrane proteins.
    
 0.706
Meso_1984
AsmA; PFAM: AsmA; KEGG: mlo:mll1482 hypothetical protein.
    
 0.706
Meso_1522
Hypothetical protein.
       0.445
Meso_1519
KEGG: sme:SMb20089 hypothetical protein.
       0.425
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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