Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_1534PFAM: major facilitator superfamily MFS_1; KEGG: jan:Jann_0119 major facilitator superfamily MFS_1. (414 aa)    
Predicted Functional Partners:
gltX1
glutamate--tRNA(Gln) ligase / glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
     
 0.784
Meso_1533
Transcriptional regulator, ArsR family; PFAM: regulatory protein, ArsR Helix-turn-helix, type 11; KEGG: mlo:mlr0745 transcriptional regulator.
  
    0.540
Meso_1532
Hypothetical protein.
  
    0.531
Meso_2580
TIGRFAM: amino acid adenylation domain; PFAM: beta-ketoacyl synthase AMP-dependent synthetase and ligase acyl transferase region condensation domain aminotransferase class-III phosphopantetheine-binding; KEGG: rpa:RPA3339 possible polyketide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
     
 0.480
Meso_0170
PFAM: extracellular solute-binding protein, family 1; KEGG: sme:SMc00784 putative iron binding protein.
  
  
 0.426
Meso_0828
Hypothetical protein; KEGG: bbr:BB4774 putative iron(III)-binding periplasmic protein precursor.
  
  
 0.426
Meso_2658
TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rru:Rru_A3199 extracellular solute-binding protein, family 1.
  
  
 0.426
Meso_2940
TIGRFAM: Twin-arginine translocation pathway signal; KEGG: eca:ECA2134 ABC transporter, substrate binding protein.
  
  
 0.426
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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