Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_1539PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: mlo:mlr0803 probable muconate cycloisomerase. (327 aa)    
Predicted Functional Partners:
Meso_0034
PFAM: protein of unknown function DUF1611; KEGG: jan:Jann_0366 protein of unknown function DUF1611.
 
  
  0.977
Meso_2968
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sme:SMc00459 putative mandelate racemase / muconate cycloisomerase.
  
  
 
0.906
Meso_2396
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: cgb:cg2635 chloromuconate cycloisomerase.
  
     0.665
Meso_1540
Protein of unknown function DUF140; PFAM: Sulfate transporter/antisigma-factor antagonist STAS protein of unknown function DUF140; KEGG: mlo:mll0801 putative ABC transport system permease protein.
       0.598
Meso_1541
PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mll0800 putative ABC transport system ATP-binding protein.
       0.577
Meso_1542
PFAM: Mammalian cell entry related; KEGG: mlo:mll0798 putative ABC transport system substrate-bindin protein.
       0.531
Meso_1543
ABC-type uncharacterized transport system auxiliary component-like protein; KEGG: mlo:mll0797 hypothetical protein.
       0.528
Meso_3046
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: ret:RHE_PF00381 putative mandelate racemase protein.
  
     0.485
Meso_3550
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: mlo:mll7149 mandelate racemase.
  
     0.470
Meso_1071
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: atc:AGR_L_2751 hypothetical protein.
  
     0.434
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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