Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_1540Protein of unknown function DUF140; PFAM: Sulfate transporter/antisigma-factor antagonist STAS protein of unknown function DUF140; KEGG: mlo:mll0801 putative ABC transport system permease protein. (395 aa)    
Predicted Functional Partners:
Meso_1541
PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mll0800 putative ABC transport system ATP-binding protein.
 
 0.999
Meso_1542
PFAM: Mammalian cell entry related; KEGG: mlo:mll0798 putative ABC transport system substrate-bindin protein.
 
 0.999
Meso_3668
PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mll3197 ABC transporter ATP-binding protein (in RpoN upstream).
 
  
  0.925
Meso_1543
ABC-type uncharacterized transport system auxiliary component-like protein; KEGG: mlo:mll0797 hypothetical protein.
 
  
 0.919
Meso_1758
PFAM: permease YjgP/YjgQ; KEGG: mlo:mll7865 hypothetical protein.
  
 
 0.906
Meso_1757
PFAM: permease YjgP/YjgQ; KEGG: mlo:mll7866 hypothetical protein.
  
 
 0.905
Meso_1912
PFAM: ABC-2 type transporter; KEGG: eba:ebA6231 ABC transporter permease protein.
    
  0.864
Meso_2851
PFAM: ABC-3; KEGG: jan:Jann_2082 ABC-3.
    
 0.862
Meso_0038
PFAM: extracellular solute-binding protein, family 5; KEGG: rsp:RSP_1481 ABC oligopeptide transporter, perplasmic substrate-binding protein OppA.
     
  0.857
Meso_1114
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02119 probable general L-amino acid transport permease ABC transporter protein.
     
  0.857
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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