Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1554PFAM: nuclease (SNase-like); KEGG: mlo:mll0560 succinoglycan biotynthesis protein ExoI. (202 aa)    
Predicted Functional Partners:
Meso_1555
PFAM: glutathione S-transferase-like; KEGG: mlo:mll0559 glutathione S-transferase.
  
    0.697
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
 
 0.618
Meso_4043
TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase-like helicase-associated region DEAD/DEAH box helicase-like Helicase ATP-dependent-like; KEGG: mlo:mlr5306 ATP-dependent helicase.
   
 0.610
Meso_1553
PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: mlo:mlr0562 histidine kinase sensor protein.
  
    0.593
Meso_0913
PFAM: acyltransferase 3; KEGG: atc:AGR_C_4279 hypothetical protein.
  
  
 0.480
rppH
NUDIX hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.
  
  
  0.443
Meso_1423
PFAM: helicase-like DEAD/DEAH box helicase-like; KEGG: mlo:mlr0349 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
    
 0.440
Meso_1773
PFAM: helicase-like DEAD/DEAH box helicase-like; KEGG: mlo:mll0224 probable ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
    
 0.440
Meso_3376
PFAM: helicase-like; KEGG: mlo:mlr3852 MgpS, ATP-dependent helicase.
    
 0.440
Meso_1136
5-amino-6-(5-phosphoribosylamino)uracil reductase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
  
 0.400
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.