Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1556KEGG: mlo:mll0533 hypothetical protein. (661 aa)    
Predicted Functional Partners:
Meso_2732
PFAM: protein of unknown function DUF882 Peptidase M15A; KEGG: bme:BMEII0010 hypothetical membrane associated protein.
 
     0.635
Meso_3596
Murein endopeptidase. Metallo peptidase. MEROPS family M74; PFAM: peptidase U6, penicillin-insensitive murein endopeptidase; KEGG: mlo:mlr4639 penicillin-insensitive murein endopeptidase A.
  
     0.489
Meso_3060
PFAM: protein of unknown function DUF949; KEGG: mlo:mlr3577 hypothetical protein.
  
   
 0.454
Meso_1557
PFAM: protein of unknown function DUF971; KEGG: mlo:mll0540 hypothetical protein.
       0.406
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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