Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1570KEGG: mlo:mll1106 hypothetical protein. (203 aa)    
Predicted Functional Partners:
Meso_3468
Chromosome segregation DNA-binding protein; TIGRFAM: parB-like partition proteins; PFAM: ParB-like nuclease; KEGG: mlo:mll4477 chromosome partitioning protein, ParB; Belongs to the ParB family.
    
 
 0.763
Meso_1014
KEGG: atc:AGR_C_3197 hypothetical protein.
  
     0.583
Meso_3262
PFAM: peptidase M48, Ste24p; KEGG: mlo:mll3863 hypothetical protein.
  
     0.583
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.540
Meso_3180
PFAM: protein of unknown function DUF1465; KEGG: mlo:mll3903 hypothetical protein.
  
     0.540
Meso_1143
PFAM: Ubiquinol-cytochrome C chaperone; KEGG: mlo:mlr8420 hypothetical protein.
  
     0.538
Meso_1569
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: mlo:mll1107 outer membrane protein, nodT candidate.
       0.534
Meso_3157
KEGG: mlo:mll3872 hypothetical protein.
  
     0.516
Meso_1718
KEGG: mlo:mlr0199 cellulase-like protein.
  
     0.507
Meso_2211
KEGG: mlo:mlr2813 hypothetical protein.
  
     0.504
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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