Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1588KEGG: rsp:RSP_2740 putative glucose/sorbosone dehydrogenase. (419 aa)    
Predicted Functional Partners:
Meso_1589
KEGG: rsp:RSP_2741 class I diheme cytochrome c4.
 
     0.942
Meso_2439
KEGG: sme:SMa1515 hypothetical protein.
  
     0.522
Meso_0632
PFAM: FAD dependent oxidoreductase; KEGG: rpa:RPA3344 possible oxidoreductase.
 
   
 0.497
Meso_1590
Transcriptional regulator, DeoR family; PFAM: regulatory protein, DeoR Helix-turn-helix, type 11; KEGG: mlo:mll0711 glycerol-3-phosphate regulon repressor.
       0.433
Meso_0583
KEGG: bte:BTH_II1747 isoquinoline 1-oxidoreductase, beta subunit.
  
     0.407
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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