Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1603KEGG: sco:SCO0366 hypothetical protein. (376 aa)    
Predicted Functional Partners:
Meso_1605
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; KEGG: atc:AGR_L_2598 sugar ABC transporter, periplasmic sugar-binding protein; TC 3.A.1.2.-.
 
   
 0.798
Meso_1604
PFAM: regulatory proteins, IclR; KEGG: bha:BH2137 transcriptional regulator (IclR family).
       0.527
Meso_3709
KEGG: mlo:mll4958 hypothetical protein.
  
   
 0.468
Meso_1606
Monosaccharide ABC transporter membrane protein, CUT2 family; PFAM: inner-membrane translocator; KEGG: atc:AGR_L_2595 ribose ABC transporter (permease); TC 3.A.1.2.-; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.453
Meso_1607
Monosaccharide ABC transporter membrane protein, CUT2 family; PFAM: inner-membrane translocator; KEGG: atc:AGR_L_2593 ribose ABC transporter (permease); TC 3.A.1.2.-; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.443
Meso_1602
Hypothetical protein.
     
 0.438
Meso_1608
Monosaccharide ABC transporter ATP-binding protein, CUT2 family; PFAM: ABC transporter related; SMART: ATPase; KEGG: atc:AGR_L_2591 D-ribose transport system ATP-binding protein; TC 3.A.1.2.-.
 
     0.410
Meso_0142
PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: ret:RHE_CH03255 myo-inositol 2-dehydrogenase protein.
 
  
 0.403
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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