Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_1614PFAM: aminotransferase, class IV; KEGG: mlo:mlr0401 D-alanine aminotransferase. (288 aa)    
Predicted Functional Partners:
Meso_1325
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 0.921
Meso_0933
PFAM: aminotransferase, class I and II; KEGG: mlo:mll7737 histidinol-phosphate aminotransferase.
  
 
 0.919
hisC
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class I and II; KEGG: mlo:mll3536 imidazole acetol phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
 
 0.919
Meso_0396
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
 0.916
Meso_0986
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
 0.916
ddl
D-alanine--D-alanine ligase; Cell wall formation.
   
 
 0.911
Meso_2359
PFAM: aminotransferase, class IV; KEGG: bms:BRA0934 D-alanine aminotransferase, putative.
  
  
 
0.907
Meso_2107
PFAM: aminotransferase, class I and II; KEGG: mlo:mlr2541 aspartate aminotransferase A.
  
 
 0.906
Meso_3626
PFAM: aminotransferase, class I and II; KEGG: sme:SMc04386 aspartate aminotransferase B protein.
  
 
 0.906
Meso_2885
TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH01745 probable 4-hydroxyphenylpyruvate dioxygenase protein.
   
 
  0.900
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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