Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_1644PFAM: ComEC/Rec2-related protein; KEGG: mlo:mll0627 DNA uptake protein. (788 aa)    
Predicted Functional Partners:
Meso_1356
TIGRFAM: DNA protecting protein DprA; PFAM: SMF protein; KEGG: mlo:mlr0689 DNA processing chain A.
 
  
 0.831
Meso_3006
PFAM: phosphoribosyltransferase; KEGG: mlo:mll3453 hypothetical protein.
 
  
 0.754
Meso_3583
Mg chelatase, subunit ChlI; KEGG: bms:BR2132 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit ATPase associated with various cellular activities, AAA_5; SMART: ATPase.
 
  
 0.720
Meso_1454
PFAM: DNA repair protein RadC; KEGG: atc:AGR_C_2959 DNA repair protein RadC homolog; Belongs to the UPF0758 family.
 
  
 0.629
gltX2
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
       0.572
nnrD
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
 
    0.564
Meso_0990
Exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ-like phosphoesterase, DHHA1; KEGG: mlo:mll0927 single-strand DNA-specific exonuclease.
 
   
 0.510
Meso_1643
Lipid A phosphate methyltransferase; KEGG: lic:LIC11491 putative protein-S-isoprenylcysteine methyltransferase.
       0.500
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
  
 0.483
Meso_0849
Hypothetical protein.
  
  
 0.468
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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