Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_1651TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap PDZ/DHR/GLGF; KEGG: mlo:mlr0328 heat shock protein htrA like; Belongs to the peptidase S1C family. (492 aa)    
Predicted Functional Partners:
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.786
Meso_0513
PFAM: AAA ATPase, central region; SMART: ATPase; KEGG: reu:Reut_C6418 AAA ATPase, central region.
    
 0.692
Meso_3794
PFAM: AAA ATPase, central region; SMART: ATPase; KEGG: pfo:Pfl_5696 AAA ATPase, central region.
    
 0.692
Meso_1650
Recombination protein MgsA; PFAM: AAA ATPase, central region ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: mlo:mlr0329 putative ATPase.
       0.659
Meso_0949
Signal peptidase I. Serine peptidase. MEROPS family S26A; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: mlo:mlr7763 signal peptidase I; Belongs to the peptidase S26 family.
 
 
 0.598
rplK
LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
   0.537
Meso_1652
PFAM: protein of unknown function DUF486; KEGG: mag:amb2194 hypothetical protein.
       0.495
rplY
LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
 
 
   0.462
Meso_1648
Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
 
   
 0.459
rplT
LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
   0.444
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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